Top 50 sequenced bacteria
04 Apr 2011Combining the NCBI complete and incomplete genome project databases as of 4/4/2011:
346 Escherichia coli 206 Staphylococcus aureus 183 Helicobacter pylori 148 Vibrio cholerae 142 Salmonella enterica 96 Streptococcus pneumoniae 94 Yersinia pestis 83 Mycobacterium tuberculosis 77 Leptospira interrogans 73 Propionibacterium acnes 73 Enterococcus faecalis 68 Staphylococcus epidermidis 67 Acinetobacter baumannii 60 Streptococcus mutans 53 Bacillus cereus 50 Chlamydia trachomatis 42 Brucella melitensis 38 Pseudomonas syringae 35 Brucella suis 32 Listeria monocytogenes 30 Haemophilus influenzae 29 Neisseria meningitidis 29 Enterococcus faecium 29 Clostridium difficile 28 Mycobacterium abscessus 25 Campylobacter jejuni 25 Burkholderia pseudomallei 25 Bacillus thuringiensis 25 Bacillus anthracis 24 Methanobrevibacter smithii 24 Clostridium botulinum 24 Brucella abortus 24 Bacteroides sp. 23 Synechococcus sp. 23 Streptococcus pyogenes 23 Shigella flexneri 22 Streptococcus sanguinis 22 Francisella tularensis 21 Bacillus subtilis 20 Lactobacillus crispatus 18 Pseudomonas aeruginosa 18 Actinobacillus pleuropneumoniae 17 Treponema denticola 17 Neisseria gonorrhoeae 17 Lachnospiraceae bacterium 16 Borrelia burgdorferi 15 Wolbachia endosymbiont 15 Lactobacillus iners 15 Lactobacillus gasseri 15 Fusobacterium sp.
Make your own:
cat complete.txt incomplete.txt | cut -f 4 | cut -d " " -f 1,2 | sort | uniq -c | sort -r | head -50